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    <title>Cancer Regulome :: About</title>

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                    <h2>Funding</h2>
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                <p>This project is supported by Award Number <b>U24CA143835</b> from the National Cancer Institute.</p>
                <p>The content on this website is solely the responsibility of the ISB and MD Anderson and does not necessarily represent the official views of the National Cancer Institute or the National Institutes of Health.</p>
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                    <h2>People</h2>
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                <p>
                    The Center for Systems Analysis of the Cancer Regulome consists of a
    close collaboration between the Institute for Systems Biology and MD
    Anderson Cancer Center.  Together they constitute a Genome Data Analysis Center (GDAC) for
    The Cancer Genome Atlas (TCGA).
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                <h8>
                    <a href="http://systemsbiology.org/shmulevich-group" target="_blank">Institute for Systems Biology</a>
                </h8>
                <ul>
                    <li>Ilya Shmulevich, Professor</li>
                    <li>Brady Bernard, Postdoctoral Fellow</li>
                    <li>Ryan Bressler, Software Engineer</li>
                    <li>Varsha Dhankani, Bioinformatics Scientist</li>
                    <li>Andrea Eakin, Software Engineer</li>
                    <li>Lisa Iype, Bioinformatics Scientist</li>
                    <li>Dick Kreisberg, Software Engineer</li>
                    <li>Michael Miller, Software Engineer</li>
                    <li>Sheila Reynolds, Research Scientist</li>
                    <li>Hector Rovira, Software Architect</li>
                    <li>Vesteinn Thorsson, Senior Research Scientist</li>
                    <li>Lesley Wilkerson, Center Manager</li>
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                <br/>
                <h8>
                    <a href="http://www3.mdanderson.org/~genomics/index.html" target="_blank">MD Anderson Cancer Center</a>
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                <ul>
                    <li>Wei Zhang, Professor</li>
                    <li>Yuexin Liu, Postdoctoral Fellow</li>
                    <li>Youting Sun, Postdoctoral Fellow</li>
                    <li>Da Yang, Postdoctoral Fellow</li>
                    <li>Xinhui Zhou, Research Investigator</li>
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                    <h2>Publications</h2>
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                B. Bernard, V. Thorsson, N. Mayande, I. Shmulevich, "Increasing coverage of transcription factor position weight matrices through domain-level homology" (submitted).
                <br/><br/>
                R. Bressler, J. Lin, A. Eakin, T. Robinson, R. Kreisberg, H. Rovira, T. Knijnenburg, J. Boyle, I. Shmulevich, “Fastbreak: a tool for analysis and visualization of structural variations in genomic data” (submitted).
                <br/><br/>
                The Cancer Genome Atlas Network, "Comprehensive molecular portraits of human breast tumors," Nature (submitted).
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                The Cancer Genome Atlas Research Network. Comprehensive molecular characterization of human colon and rectal cancer. Nature 487, 330-337 (2012).
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                Y. Liu, Y. Sun, R. Broaddus, J. Liu, A. K. Sood, I. Shmulevich, Wei Zhang, "Integrated Analysis of Gene Expression and Tumor Nuclear Image Profiles Associated with Chemotherapy Response in Serous Ovarian Carcinoma," PLoS ONE, Vol. 7, No. 5, e36383, 2012. PMCID: PMC3348145
                <br/><br/>
                D. Yang, S. Khan, Y. Sun, K. Hess, I. Shmulevich, A. K. Sood, W. Zhang, "Association of BRCA1 and BRCA2 Mutations With Survival, Chemotherapy Sensitivity, and Gene Mutator Phenotype in Patients With Ovarian Cancer," JAMA, Vol. 306, No. 14, pp. 1557-1565, 2011. PMCID In Progress.
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                    <h2>Contact Us</h2>
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                <p><a href="mailto:info@csacr.org" target="_blank">info@csacr.org</a></p>
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                    Attn:  Lesley Wilkerson<br/>
                    Institute for Systems Biology<br/>
                    401 Terry Ave N<br/>
                    Seattle WA 98103<br/>
                    (206) 732-1321<br/>
                    (206) 732-1260 (fax)
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